Generation and trapping reaction of an efficient 1,2-dehydrocarborane precursor, phenyl[o-(trimethylsilyl)carboranyl]iodonium acetate

An efficient 1,2-dehydrocarborane precursor, phenyl[o-(trimethylsilyl)carboranyl]iodonium acetate, was readily prepared by reaction of [o-(trimethylsilyl)carboranyl]lithium and IPh(OAc)2. The facile 2+4 cycloaddition of with dienes such as anthracene, naphthalene, norborna-2,5-diene and 2,5-dimethylfuran gave high yields of the 1,2-dehydrocarborane adducts in the presence of a desilylating agent. The reaction of with a cyclic alkene and strained cycloalkynes afforded the adducts formed by the ene reaction and the 2+2 cycloaddition reaction. The reaction of with a bicyclopalladacycle yielded the cyclization product. The structures of compounds and were determined by single-crystal X-ray crystallography.     

Hydroxylation of methane by non-heme diiron enzymes: molecular orbital analysis of C-H bond activation by reactive intermediate Q

The electronic structures of key species involved in methane hydroxylation performed by the hydroxylase component of soluble methane monooxygenase (sMMO), as proposed previously on the basis of high-level density functional theory, were investigated. The reaction starts with initial approach of methane at one of the bridging oxo atoms in intermediate Q, a di(mu-oxo)diiron(IV) unit. This step is accompanied by a proton-coupled outer-sphere transfer of the first electron from a C-H sigma-bond in methane to one of the metal centers. The second electron transfer, also an outer-sphere electron transfer process, occurs along a two-component reaction pathway. Both redox reactions are strongly coupled to structural distortions of the diiron core. The electronic consequence and driving force of these distortions are intuitively explained by using the computed Kohn-Sham orbitals in the broken-symmetry framework to incorporate the experimentally observed antiferromagnetic coupling of the unpaired electrons at the metal centers. The broken-symmetry orbital scheme is essential for describing the C-H bond activation process in a consistent and complete manner, enabling derivation of both an intuitive and quantitative understanding of the most salient electronic features that govern the details of the hydroxylation.     

Proton as the simplest of all catalysts for [2 + 2] cycloadditions: DFT study of acid-catalyzed imine metathesis

The mechanism of imine metathesis was studied as a prototype reaction for the impact that heteroatom substitution has on thermally forbidden [2 + 2] addition reactions using high-level density functional theory in combination with a continuum solvation model. The intuitively expected high activation barriers were confirmed for N-alkyl- and N-aryl-substituted imine reactants with transition state free energies of 78.8 and 68.5 kcal/mol, respectively, in benzene. The computed reaction energy profiles were analyzed to discover possible strategies for lowering the transition state energy. Protonation of the imine nitrogen was proposed as a possible catalytic route and was explicitly modeled. The computed reaction energy profile shows that protonation of one of the imine reactants has an enormous effect on the overall rate of metathesis and lowers the activation barrier by as much as 37.3 and 30.6 kcal/mol for the N-alkyl and N-aryl reactants, respectively. These results suggest that acid-catalyzed imine metathesis should be amenable at elevated temperatures. Furthermore, the protonation of both reactants of the metathesis reaction is predicted to be not productive owing to electrostatic repulsion of the reactants, thus suggesting that there should be an optimum pH for the catalytic turnover. A detailed analysis of the catalytic mechanism is presented, and the primary driving force for the catalysis is identified. Upon protonation of the imine nitrogen, the key [2 + 2]-addition step becomes asynchronous and one of the two intermolecular N-C bonds is formed before traversing the transition state, resulting in a substantial net decrease of the overall energy requirement. The general applicability of this intuitively understandable mechanism for designing structural features for lowering the energy of transition state structures is explored.     

Terminal vanadium-neopentylidyne complexes and intramolecular cross-metathesis reactions to generate azametalacyclohexatrienes

Four-coordinate vanadium complexes containing a terminal neopentylidyne functionality have been prepared by two consecutive alpha-hydrogen abstraction reactions both of which were induced by one-electron oxidations. Among these vanadium-alkylidyne complexes are the neutral and the cation (Nacnac)VCtBu(OTf) and [(Nacnac)VCtBu(THF)]+, respectively (Nacnac- = [Ar]NC(CH3)CHC(CH3)N[Ar], Ar = 2,6-(CHMe2)2C6H3). The vanadium-alkylidynes have been characterized by 1H, 13C, 51V NMR spectroscopy and single-crystal X-ray diffraction and are consistent with a short VC bond. These alkylidynes were found to transform to azametalacyclohexatriene systems via an intramolecular cross-metathesis reaction. Kinetic studies of the transformation of (Nacnac)VCtBu(OTf) in C7D8 reveal the formation of the azametalacyclohexatriene to be independent of solvent (toluene vs THF) and the reaction to be first order in vanadium (k = 3.30(5) x 10-5 s-1 at 80 degrees C, with activation parameters DeltaH= 25.4(3) kcal/mol, DeltaS = -6(3) cal/molK). High-level DFT calculations on the full model suggest an intramolecular mechanism invoking only one transition state. The overall thermodynamic driving force for the reaction (DeltaG) in solution phase was estimated to be -21.3 kcal/mol.     

The mechanism behind enhanced reactivity of unsaturated phosphorus(v) electrophiles towards thiols

Vinyl- and ethynyl phosphorus(v) electrophiles are a versatile class of thiol-reactive reagents suitable for cysteine-selective peptide and protein modifications, especially for the generation of antibody conjugates. Herein we investigated the reactivity of various P(v) reagents towards thiol addition. Complementing previous studies, we observed that the heteroatoms X (X = S, O, NH) as well as the vinyl- vs. ethynyl-substituent bound to phosphorus greatly influence the overall reactivity. These experimentally observed trends, as well as the high Z-selectivity for thiol additions to ethynyl derivatives, were further elucidated using DFT calculations. Hyperconjugation was a key means of stabilizing the intermediate generated upon the thiol addition, thus determining both the reactivity and stereoselectivity of unsaturated P(v) electrophiles. Specifically, the energetically low-lying σ antibonding orbital of the P–S bond more readily stabilizes the electron density from the lone pair (LP) of the generated carbanion, rendering the phosphonothiolates more reactive compared to the derivatives bearing oxygen and nitrogen. Our studies provide a detailed mechanistic picture for designing P(v)-based electrophiles with fine-tuned reactivity profiles.

Computational analysis of different unsaturated phosphorus(v) electrophiles revealed a mechanistic picture to rationalize their selectivity and reactivity in cysteine-selective peptide and protein modifications.     

Kinetics and thermodynamics of H. transfer from (eta5-C5R5)Cr(CO)3H (R = Ph,Me, H) to methyl methacrylate and styrene

The rates of H/D exchange have been measured between (a) the activated olefins methyl methacrylate-d(5) and styrene-d(8), and (b) the Cr hydrides (eta(5)-C(5)Ph(5))Cr(CO)(3)H (2a), (eta(5)-C(5)Me(5))Cr(CO)(3)H (2b), and (eta(5)-C(5)H(5))Cr(CO)(3)H (2c). With a large excess of the deuterated olefin the first exchange goes to completion before subsequent exchanges begin, at a rate first order in olefin and in hydride. (Hydrogenation is insignificant except with styrene and CpCr(CO)(3)H; in most cases, the radicals arising from the first H. transfer are too hindered to abstract another H. .) Statistical corrections give the rate constants k(reinit) for H. transfer to the olefin from the hydride. With MMA, k(reinit) decreases substantially as the steric bulk of the hydride increases; with styrene, the steric bulk of the hydride has little effect. At longer times, the reaction of MMA or styrene with 2a gives the corresponding metalloradical 1a as termination depletes the concentration of the methyl isobutyryl radical 3 or the alpha-methylbenzyl radical 4; computer simulation of [1a] as f(t) gives an estimate of k(tr), the rate constant for H. transfer from 3 or 4 back to Cr. These rate constants imply a DeltaG (50 degrees C) of +11 kcal/mol for H. transfer from 2a to MMA, and a DeltaG (50 degrees C) of +10 kcal/mol for H. transfer from 2a to styrene. The CH(3)CN pK(a) of 2a, 11.7, implies a BDE for its Cr-H bond of 59.6 kcal/mol, and DFT calculations give 58.2 kcal/mol for the Cr-H bond in 2c. In combination the kinetic DeltaG values, the experimental BDE for 2a, and the calculated DeltaS values for H. transfer imply a C-H BDE of 45.6 kcal/mol for the methyl isobutyryl radical 3 (close to the DFT-calculated 49.5 kcal/mol), and a C-H BDE of 47.9 kcal/mol for the alpha-methylbenzyl radical 4 (close to the DFT-calculated 49.9 kcal/mol). A solvent cage model suggests 46.1 kcal/mol as the C-H BDE for the chain-carrying radical in MMA polymerization.     

Surface and bulk sorption of uranium(VI) onto granite rock

Surface and bulk sorption of U(VI) onto granite rock with different types of surfaces were carried out and the results were compared for the different surfaces such as crushed granite, machined core granite, and core granite with fractured surface. The sorption behavior of U(VI) dependent on surface types was investigated and discussed for contacting time, pH, constituent minerals, and surface area. Results from the sorption experiments were also compared each other in order to analyze the differences in sorption behaviors of U(VI) and to correlate the surface sorption coefficient K_a and the bulk sorption coefficient K_d. The effect of contact time and pH on the sorption of U(VI) onto fractured surfaces was larger than that onto the machined fresh surfaces but smaller than that onto the crushed surfaces. As expected, it was noticed that the surface sorption coefficients of U(VI) for the natural fracture surfaces were greater than those of the machined fresh surfaces due to the higher content of secondary minerals such as calcite and chlorite which acted as stronger sorbents. It is presumed that there are many micro-fractures or micro-pores available for the uranium sorption on the granite surfaces, even on the machined fresh surfaces, and there can be an intrinsic difference between the surface and the bulk sorption due to the different types of surfaces.     

Novel alignment mechanism of liquid crystal on a hydrogenated amorphous silicon oxide

The mechanism of liquid crystal (LC) alignment has been investigated during the last few decades for inorganic materials as well as for organic materials; however, it has not been clearly confirmed for some alignment materials. Inorganic alignment materials such as amorphous silicon oxide (a-SiOx) and hydrogenated amorphous silicon oxide (a-SiOx:H) are deposited on indium tin oxide (ITO) films on glass by reactive sputtering deposition. After deposition, the inorganic alignment materials are irradiated using an Ar+ ion beam (IB) for LC alignment. On the basis of the experimental results, a-SiOx films deposited by the sputtering do not align the LC, but a-SiOx:H films treated with varying IB energies, IB incident angles, IB doses, and IB irradiation times have excellent alignment properties and electrooptical properties, identical to those of polyimide (PI). These results imply that inorganic alignment layers irradiated by IB can be adopted as an LC alignment layer instead of rubbed PI. Additionally, hydrogen plays an important role in LC alignment because of the difference in alignment properties between a-SiOx films and a-SiOx:H films. We investigate the mechanism of IB-treated inorganic alignment layers and suggest that LCs are aligned by chemical effects, such as van der Waals interaction, more than by physical effects, such as morphology effects, in the inorganic alignment layer irradiated by IB.     

Silicon enhanced carbon nanotube growth on nickel films by chemical vapor deposition

Silicon enhances carbon nanotube growth on nickel films by chemical vapor deposition using methane and hydrogen. Nanotube growth characteristic is significantly improved on nickel films patterned by argon plasma etching on silicon oxide layers. Auger electron spectroscopy shows that a reduced silicon phase forms in the surface silicon oxide layer by Ar ion bombardment used for patterning. The enhanced growth of carbon nanotubes could be ascribed to an oxygen removal effect by silicon in the process of synthesis.